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rs27378160 SNP Detail
Summary
  • ID
    rs27378160
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:103865858 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTAGCTGCCT CAAGAGGACA
    GAGATCATCT GAACAGAAGT CTTCAGTGGT GATAAGTCAG ATAGGTAATA GTTTATAATA
    ACTGTTACTA AATACAAAGG TAGACACTCA TTAGACACAC TTTCCAAAAA TCCTGTAAGG
    AAGATCATTA TTGTCTTTTT GTGGAAATAG TACTAGTTTA GGGCATAAAA GACCAAATTT
    R
    CCATCAAAAG GTAAAAGGTA AATTCAGGAA TTGACTTACT TTGAAAGTAT AATCTTTACT
    TCAGTTGTGG TTACAGGGAG AGGACTGAGC CCATTTTGTT TAGAATATCT AAGGTCTCTC
    TTTTCCGCAT GAGGGCATTT AGAGTGTGAG AGTGCAGTAT GGTTGTTCTT TCCGACAGAC
    TCATACCTCC TTGTTCTTTC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
ss37570988 NES09070472 PERLEGEN MM_PANEL2 f SNP G G A G A G G G
SNP Consensus Information
SNP Consensus Type
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
rs27378160 SNP G G A G A G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37570988 NES09070472 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:103865858 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Fbxo3 F-box protein 3 Intron
Noncoding-Transcript-Variant
Rr562010 regulatory region 562010 250 bp distal
Rr562011 regulatory region 562011 473 bp distal
Rr562012 regulatory region 562012 179 bp proximal
Rr562013 regulatory region 562013 1011 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory