rs27378158 SNP Detail

Summary

• ID
  rs27378158
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103865985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCCTGTA AGGAAGATCA
  TTATTGTCTT TTTGTGGAAA TAGTACTAGT TTAGGGCATA AAAGACCAAA TTTGCCATCA
  AAAGGTAAAA GGTAAATTCA GGAATTGACT TACTTTGAAA GTATAATCTT TACTTCAGTT
  GTGGTTACAG GGAGAGGACT GAGCCCATTT TGTTTAGAAT ATCTAAGGTC TCTCTTTTCC
  S
  CATGAGGGCA TTTAGAGTGT GAGAGTGCAG TATGGTTGTT CTTTCCGACA GACTCATACC
  TCCTTGTTCT TTCGTCCTTT GGCATTCCTA GTTCCTGTGC CTGTTGTACA TCTAGCTGTC
  AGATTTCTTG GCCACGTCTG CTCTAGTCCT AGGTGCCAGT TCTCAGGCTT GCCAGGAGTT
  TTGGAATCGG GTTAACTGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37570986	NES09070474	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27378158					SNP	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37570986	NES09070474	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103865985 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxo3	F-box protein 3			Intron
				Noncoding-Transcript-Variant
Rr562010	regulatory region 562010			377 bp distal
Rr562011	regulatory region 562011			600 bp distal
Rr562012	regulatory region 562012			52 bp proximal
Rr562013	regulatory region 562013			884 bp proximal