rs27378156 SNP Detail

Summary

• ID
  rs27378156
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103866131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGAGAG GACTGAGCCC
  ATTTTGTTTA GAATATCTAA GGTCTCTCTT TTCCGCATGA GGGCATTTAG AGTGTGAGAG
  TGCAGTATGG TTGTTCTTTC CGACAGACTC ATACCTCCTT GTTCTTTCGT CCTTTGGCAT
  TCCTAGTTCC TGTGCCTGTT GTACATCTAG CTGTCAGATT TCTTGGCCAC GTCTGCTCTA
  S
  TCCTAGGTGC CAGTTCTCAG GCTTGCCAGG AGTTTTGGAA TCGGGTTAAC TGGGAACATC
  TACAGTGCTG GGGATGCTGG GAATTTCAGG CTCTGAGTTC TACACTAAGT TAGGAACCTG
  GCTGCTGACT CGGGCCACAG TCCTCATTCA GCTTTAAGGT TATGTAGGTG TCAGGTTCAA
  GAGGAAGTTA GCAGCAGATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37570984	NES09070476	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27378156					SNP	G	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37570984	NES09070476	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103866131 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxo3	F-box protein 3			Intron
				Noncoding-Transcript-Variant
Rr562010	regulatory region 562010			523 bp distal
Rr562011	regulatory region 562011			746 bp distal
Rr562012	regulatory region 562012			within coordinates
Rr562013	regulatory region 562013			738 bp proximal