rs27378153 SNP Detail

Summary

• ID
  rs27378153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103866671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAACAAAAG GGAGTGGAAA AGGGAGTGGC TGGGTTCCAA
  TAAGAAGGAT TTAGCCTCTC AGCTATTATT TACCAAACCC TGATTAATTA CTAGTACCTT
  Y
  ACTTCACATC AAAGAAAAGA TACAAAGAGA GTTTAATAAT TAGTAAGCAG CAGAGATAAA
  CCCAGTCTTG GCTTCTGATA AATCGTCACA GCTTCCTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37570981	NES09070405	PERLEGEN	MM_PANEL2	f	SNP			T		C		C	C	C	C	C
ss45371259	mCV24757125	ABI	CRAMUS_MOUSE	f	SNP	C	T		C		T
ss147142287	ENSMUSSNP238215	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27378153					SNP	C	T	T	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37570981	NES09070405	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103866671 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxo3	F-box protein 3			Intron
				Noncoding-Transcript-Variant
Rr562010	regulatory region 562010			1063 bp distal
Rr562011	regulatory region 562011			1286 bp distal
Rr562012	regulatory region 562012			376 bp distal
Rr562013	regulatory region 562013			198 bp proximal