rs27378152 SNP Detail

Summary

• ID
  rs27378152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103867235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTTTCTGT TAGCTAGGGG TGTTTTTACT TCTTAATCTT
  ACATATTAAG TAGTCTAACA TGTAGCACAT AGCATACAAA TGTTAGCCTC TTTCCTTATC
  Y
  ACCATACTCC TCCTGGCTTT TATTCAGCTT GGTTTCTTTT CTATCAAACT CTTTATTTTT
  TACCTTTTCT TTTATATGTG TATGCAGAGT ACGTATATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37570980	NES09070406	PERLEGEN	MM_PANEL2	f	SNP		C	C		C	T		C		T	C	C
ss45229733	mCV24757116	ABI	CRAMUS_MOUSE	f	SNP	C			T
ss147142293	ENSMUSSNP6166998	ENSEMBL	ENSEMBL_Sanger	f	SNP	C								C
ss320443596	CHEV_2_103877047	CHEVERUD	SCREENING_POP	f	SNP							C						C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27378152					SNP	C	C	C	T	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37570980	NES09070406	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103867235 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxo3	F-box protein 3			Intron
				Noncoding-Transcript-Variant
Rr562010	regulatory region 562010			1627 bp distal
Rr562011	regulatory region 562011			1850 bp distal
Rr562012	regulatory region 562012			940 bp distal
Rr562013	regulatory region 562013			345 bp distal