rs27378151 SNP Detail

Summary

• ID
  rs27378151
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103867326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTTATA TCTTTCTGTT
  AGCTAGGGGT GTTTTTACTT CTTAATCTTA CATATTAAGT AGTCTAACAT GTAGCACATA
  GCATACAAAT GTTAGCCTCT TTCCTTATCT ACCATACTCC TCCTGGCTTT TATTCAGCTT
  GGTTTCTTTT CTATCAAACT CTTTATTTTT TACCTTTTCT TTTATATGTG TATGCAGAGT
  W
  CGTATATGTA CATGTTAGTG TGTGTGCCTA CTTGTGTGCA TGTGAAGACC AGAGCTTGAT
  GTGCCTCACA TCTACCCTTT TGTTTTATTT TTTGAGACAG GGTTCCTCTG TGTAAAGCTC
  TGGCTGTCCT GGAACTTTCT CTATAGATTA GGCTAGCCTC AAACTCAAAA AGGTCCACCT
  GCCTCTGCCT CCCACTGAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37570979	NES09070407	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	T		A	A	T
ss147142297	ENSMUSSNP843846	ENSEMBL	ENSEMBL_Sanger	f	SNP	A					T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27378151					SNP	A	A	A	A	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37570979	NES09070407	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103867326 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxo3	F-box protein 3			Intron
				Noncoding-Transcript-Variant
Rr562010	regulatory region 562010			1718 bp distal
Rr562011	regulatory region 562011			1941 bp distal
Rr562012	regulatory region 562012			1031 bp distal
Rr562013	regulatory region 562013			436 bp distal