rs27374758 SNP Detail

Summary

• ID
  rs27374758
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103200951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTAGCA GGGCCAGGTC
  CTGACCCTCA CCTGTGTTGC ATGTGTTCAC ATTTTTCTGA GAACATGACA CAAGGCCATC
  TGTCAACTGT TTCTGCTCTG TCCTGGACTG AATGTGTTCA GCAGCTGTAA ATGTAAATGT
  GTTCAGCCAC ATCTCTGCCC TGAGCACAGT GACGATGGCT AATTAATAAT AAGCAAATGG
  W
  TGGGACAGGA GCTGACTCTG ACACCTCAAA CCACGAGGCC CACCTAGAGA CCTCCTTGAA
  TCAGCCCAAG CATAGCTAAC AGGGAGAGCA GAGTAGTCTT CCCACCCTCT CGACGTAGGC
  AGCTACTTCC ACCAAAGCTA AGAGAGATCC TGTTACCTCA GACACGGACC TACTTATCCA
  GTAAAGATGA AGTGCCTCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37573897	NES09077511	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27374758					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37573897	NES09077511	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103200951 () rs orientation: forward

Symbol	Name	Function Class
A930006I01Rik	RIKEN cDNA A930006I01 gene	within coordinates
Rr561830	regulatory region 561830	532 bp proximal