rs27374754 SNP Detail

Summary

• ID
  rs27374754
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103201131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAATAAT AAGCAAATGG
  ATGGGACAGG AGCTGACTCT GACACCTCAA ACCACGAGGC CCACCTAGAG ACCTCCTTGA
  ATCAGCCCAA GCATAGCTAA CAGGGAGAGC AGAGTAGTCT TCCCACCCTC TCGACGTAGG
  CAGCTACTTC CACCAAAGCT AAGAGAGATC CTGTTACCTC AGACACGGAC CTACTTATCC
  W
  GTAAAGATGA AGTGCCTCAG CCACCCCAGC TTCTACCATG CCAGCATAAC CACTCCCTCC
  TCCCTCTCTC CACCGAGAGA ATGGCAGTGC ATAGTACAAC TGACCACCAA GGCACTGGAT
  GAAGACAATA GAAGGTTATA CCACAGCAGT TGCTTTTGCC TGAAAACCTT CCTGAGTTAC
  TTAGCTTTTC CATGAATCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37573893	NES09077515	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27374754					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37573893	NES09077515	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103201131 () rs orientation: forward

Symbol	Name	Function Class
A930006I01Rik	RIKEN cDNA A930006I01 gene	within coordinates
Rr561830	regulatory region 561830	352 bp proximal
Tssr582	transcription start site region 582	1897 bp downstream
Tssr25462	transcription start site region 25462	1907 bp downstream
Tssr25463	transcription start site region 25463	1925 bp downstream
Tssr25464	transcription start site region 25464	1939 bp downstream