rs27374750 SNP Detail

Summary

• ID
  rs27374750
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103202264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTTGCAT CGTGCATGAT
  AACAGTAGAA ATTCAATAAA TATGGTTGGG AGCTAAAAAA GGTTCTCATA AAGACTAATA
  AACAGTAGTT ATGATTATCA CTGATGTCCC AGGGATAATG AGGAAAACCT TTGCCCCTGC
  CTGTCTCCAG TAATGGACTT GATCAAGTCT CCAGCATCAG TTCAGTGTGA CTTTTGTCAG
  K
  CTGGCCTGGC CTGGTTAAGC CCCTTATTCC CCTCAGTCCA GGATGACCCC ACTCTGACCC
  CAAATTCACT TCAGAACACT AAGGCCATCA TCTGACTGCC ACCAGGGGTG ACTTGCCTCT
  TCAGGTCAGG GTCAGGACTT TCTTGGTCCT GCCTTTTGTT GGCTCTGTCA TTTGGCACAG
  AGTTCCCTAT TCAGTAGCGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37573889	NES09077485	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27374750					SNP	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37573889	NES09077485	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103202264 () rs orientation: forward

Symbol	Name	Function Class
A930006I01Rik	RIKEN cDNA A930006I01 gene	within coordinates
Rr561830	regulatory region 561830	760 bp distal
Tssr582	transcription start site region 582	764 bp downstream
Tssr25462	transcription start site region 25462	774 bp downstream
Tssr25463	transcription start site region 25463	792 bp downstream
Tssr25464	transcription start site region 25464	806 bp downstream