rs27374749 SNP Detail

Summary

• ID
  rs27374749
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103203013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCATCTCTG ATTCACTCCT TTGGGTTCAG CACCACCCAC
  TCTGCTCACC TTGAAAAACA TAGAATCTCC TGGGAGGGGC TCAGGGTAAG TCGCTACCAT
  M
  TGCAGTGCTA TGTAAGTCCC CAGCAGTTCT ATTGCATCTT GATAGGAGAG CTATCTGTGT
  GCTTGTAATC GGCTTTGAAG GCAAGCTTTG TTAGCGTCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37573888	NES09077461	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C	C		C	A	C	C	C	C	C	C
ss45343979	mCV22759910	ABI	CRAMUS_MOUSE	f	SNP		C	A				C
ss147133650	ENSMUSSNP488308	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27374749					SNP	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37573888	NES09077461	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103203013 () rs orientation: forward

Symbol	Name	Function Class
A930006I01Rik	RIKEN cDNA A930006I01 gene	within coordinates
Rr561830	regulatory region 561830	1509 bp distal
Tssr582	transcription start site region 582	15 bp downstream
Tssr25462	transcription start site region 25462	25 bp downstream
Tssr25463	transcription start site region 25463	43 bp downstream
Tssr25464	transcription start site region 25464	57 bp downstream