rs27374748 SNP Detail

Summary

• ID
  rs27374748
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103203037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGC AGTGCTATGT AAGTCCCCAG
  M
  AGTTCTATTG CATCTTGATA GGAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37573887	NES09077462	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C	C		C	A	C	C	C	C	C	C
ss45315370	mCV22759900	ABI	CRAMUS_MOUSE	f	SNP		C	A				C
ss147133657	ENSMUSSNP6431110	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27374748					SNP	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37573887	NES09077462	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103203037 () rs orientation: forward

Symbol	Name	Function Class
A930006I01Rik	RIKEN cDNA A930006I01 gene	within coordinates
Rr561830	regulatory region 561830	1533 bp distal
Tssr582	transcription start site region 582	3 bp upstream
Tssr25462	transcription start site region 25462	1 bp downstream
Tssr25463	transcription start site region 25463	19 bp downstream
Tssr25464	transcription start site region 25464	33 bp downstream