rs27374746 SNP Detail

Summary

• ID
  rs27374746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103203433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT TTTGGTACCC GATTCCTTCA
  R
  CGATGACCAA GAAGAGAGTA AGAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37573885	NES09077464	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A		G	G	A	A	G	A	A	A
ss45246435	mCV22759887	ABI	CRAMUS_MOUSE	f	SNP		A	G				A		G
ss147133670	ENSMUSSNP3159323	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27374746					SNP	A	A	G	A	A	A	A	G	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37573885	NES09077464	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103203433 () rs orientation: forward

Symbol	Name	Function Class
A930006I01Rik	RIKEN cDNA A930006I01 gene	324 bp upstream
Rr561830	regulatory region 561830	1929 bp distal
Tssr582	transcription start site region 582	399 bp upstream
Tssr25462	transcription start site region 25462	386 bp upstream
Tssr25463	transcription start site region 25463	368 bp upstream
Tssr25464	transcription start site region 25464	351 bp upstream