rs27374487 SNP Detail

Summary

• ID
  rs27374487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102626068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAGCTAC CACGTGGGTG
  CTGGGAATTG AACCCAGGTC CTCTGGAAGA GAAGAAAGTG CTCTTATCTG CTGAGCCATC
  TCTCCAGCTC TCTTCCTCAC AGTTTTGAAA GTTTGGTTAA TCCATTCTCT CACTGAGGCA
  GTGAGGGGTC ATAGCTCCGC AGTCCCTGTA AGGCAAACAG CCTAAGTGAG GATCAATGTC
  Y
  GTGAAACTTG TCCACATGAT ATGAAAATGA TATGACATTC ACGCTTGGAC ACACGCACAT
  TTGAAAGCAG AATGATGTAG TTGGCAAAGT AGACAAAGAA AATGTCTTCC ACTGCTATTC
  CCTCCCTCCT CACCATTCTT CCGTTATTTA GGGTAACAAA ATTGTAGTTT TCCACCTATT
  GTCTGGCCGG GGGTGGGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37575915	NES09076789	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27374487					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37575915	NES09076789	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102626068 () rs orientation: forward

Symbol	Name	Function Class
Rr397151	regulatory region 397151	140 bp downstream
Rr561738	regulatory region 561738	225 bp distal