rs27374447 SNP Detail

Summary

• ID
  rs27374447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102633404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTTATAAT TCACCTGTTT GTCTAATGAG CAAATCTTGT
  TTTAGAGTCA TTTTTATCTA TTTTGATCAC CTTGAAATTT GTTTAATGGT TTATTAGAGT
  Y
  GACACCAACT TTCTTTGGGA AGTACAATGA AAATACTTCT GTTGAGAGGG CTGGTTTGTT
  AGTTAAAGGG ATGGGGAGAG AATTCAATTG GTCAAGATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37575875	NES09076486	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27374447					SNP	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37575875	NES09076486	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102633404 () rs orientation: forward

Symbol	Name	Function Class
Rr561739	regulatory region 561739	896 bp proximal
Rr561740	regulatory region 561740	989 bp proximal
Rr561741	regulatory region 561741	1082 bp proximal
Rr561742	regulatory region 561742	1180 bp proximal