rs27374444 SNP Detail

Summary

• ID
  rs27374444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102634124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCTTCCT ATCTGTAGGA
  TGAGGATAAA TGGAGCTTTA TCTCAGGTGC TCAGTGTCTT GCTTTACTTT TCTCACTTTA
  ATGTGTGTGC TTACAGAGTG CTCCTTGCTA GACAATATTC TGAGACCTTT AAGACATCAA
  TGTGTTTTGT CCTCATAACT CTGTAAACCA CATTCTATTG TCTGTATCTA CTGAAAGAAA
  Y
  TCAAGTTTGG TATGCACTAT GTCTAAGACA GTGCCTGAAA GATAACCAGT GCCCAGGGTC
  ATCAGTCACA GGTCAAAATC TTTCTTTGTA TCTTCCTCAG AAAAGTCACT TGACTACTCT
  TCTTTGTACT CCTCGGATAA GGATGTCTCC AAATAGACCA GAAAATGTCT AGAAATTAGC
  AGATAGGGGG CAAATGATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37575872	NES09076442	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27374444					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37575872	NES09076442	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102634124 () rs orientation: forward

Symbol	Name	Function Class
Rr561739	regulatory region 561739	176 bp proximal
Rr561740	regulatory region 561740	269 bp proximal
Rr561741	regulatory region 561741	362 bp proximal
Rr561742	regulatory region 561742	460 bp proximal
Rr561743	regulatory region 561743	1615 bp proximal