rs27374442 SNP Detail

Summary

• ID
  rs27374442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102634491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTAGAAAT TAGCAGATAG
  GGGGCAAATG ATGGTCATGC TGGAGCTTAC TGTCTCCTTT CCCCCATGAT CTGTGAATCC
  TTTTCAAATA CAAGATGCTG ACTAAACCAG AAGATGGAAC ACTATCTGAA TGCTTGAGCC
  CAGACTACCC AGAAACACTG CTTCTCCACA CAAGCCTTTA GTGAAAGGAT CCCCACGTTC
  R
  CCTTCCTTCT TCTTTCTAGA TTTGCCTTGA GGATTCAGGA TTGAAATCAA ATAGCATTCA
  ACTTCCACAA AGATCAAAGA GAGGTTTCTG GGATTTCCAC TAGAGGGCAC ATTATCAACA
  GGCCAGAAAT AGCCAACAAG TTGGCCTAAA GCCACAAAGA AATGACAGTT TCTAGGAGGT
  ACATGAACCC AGGTATCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37575870	NES09076446	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27374442					SNP	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37575870	NES09076446	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102634491 () rs orientation: forward

Symbol	Name	Function Class
Rr561739	regulatory region 561739	170 bp distal
Rr561740	regulatory region 561740	77 bp distal
Rr561741	regulatory region 561741	within coordinates
Rr561742	regulatory region 561742	93 bp proximal
Rr561743	regulatory region 561743	1248 bp proximal