rs27374441 SNP Detail

Summary

• ID
  rs27374441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102634779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGATTTC CACTAGAGGG
  CACATTATCA ACAGGCCAGA AATAGCCAAC AAGTTGGCCT AAAGCCACAA AGAAATGACA
  GTTTCTAGGA GGTACATGAA CCCAGGTATC AGGGATTTTT TTTCTGATTC AGAGAAGCTC
  CAGCACTGAG AGAGACTCCA GCATCACTAG TGGCTTTGCA ACTCGGGCTT TGTATTTCTG
  R
  GCTTCAGTGG TTTCCCAAAC CTTGGCTTCA AACAGTTAGA AGAGAAGCCA AGAGCAGCTA
  GTCTAGAAAT TTGTTTTTTA AAACCCACTG CTTTACAGCT ACTGTGATTT ATGTGGCTAC
  TGTGTTCACA GATGAGACTT AATAAACAAC CGTTATCTGA GTGCTCCTGG ATAACTGTTT
  TGATCCCTTT CTTCTTTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37575869	NES09076448	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27374441					SNP	A	A	A	A	A	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37575869	NES09076448	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102634779 () rs orientation: forward

Symbol	Name	Function Class
Rr561739	regulatory region 561739	458 bp distal
Rr561740	regulatory region 561740	365 bp distal
Rr561741	regulatory region 561741	within coordinates
Rr561742	regulatory region 561742	174 bp distal
Rr561743	regulatory region 561743	960 bp proximal