rs27374440 SNP Detail

Summary

• ID
  rs27374440
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102634857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAACTCGGGC TTTGTATTTC TGAGCTTCAG TGGTTTCCCA
  AACCTTGGCT TCAAACAGTT AGAAGAGAAG CCAAGAGCAG CTAGTCTAGA AATTTGTTTT
  K
  TAAAACCCAC TGCTTTACAG CTACTGTGAT TTATGTGGCT ACTGTGTTCA CAGATGAGAC
  TTAATAAACA ACCGTTATCT GAGTGCTCCT GGATAACTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37575868	NES09076450	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		G		T	T	T	T	T	T
ss45315297	mCV25049801	ABI	CRAMUS_MOUSE	f	SNP		T	T				T		G
ss147124494	ENSMUSSNP734503	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27374440					SNP	T	T	T	T	T	T	T	G	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37575868	NES09076450	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102634857 () rs orientation: forward

Symbol	Name	Function Class
Rr561739	regulatory region 561739	536 bp distal
Rr561740	regulatory region 561740	443 bp distal
Rr561741	regulatory region 561741	5 bp distal
Rr561742	regulatory region 561742	252 bp distal
Rr561743	regulatory region 561743	882 bp proximal