rs27373425 SNP Detail

Summary

• ID
  rs27373425
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151522901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAGCTG ACACATGATT
  TATACTAGTG GTAGGAGGGT TTTGATGAGC GTCCTCTGGC TGGCTACGGA AGGGAGCTTC
  GCCTGCTCTT TTCCCCTCGG AGCAGCTCGG TCAGTTGCCT CGGCACAGGC TGGCAGGCTC
  TGCCCTCTGA TCCCAGCCTT GCTCGGAAAG GTGATGTGTT TCTGCTGGGC CTTGTGTCCT
  S
  CCAGTGGGTG CTTTCAGCTC GAAGCTCCTC CAGGAGGCTA TGCAGATGCC TTAGTGTGAG
  TAGCAGTTTC TGGTCTTGGA TCTGCATCTC GGCCTAGGAG AAAGGGGGCG TCAGTGAGAG
  TGTGACAGGC ACTGTCTGTG CCATCAGTCT GCCTCCCGGC TCAGTGGAGA CAAGCCCCTA
  CCTTGTCACA CAAGCCACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37564748	NES08919239	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	G	G	C	G	G	G		C	C		C
ss320561100	CHEV_2_151506717	CHEVERUD	SCREENING_POP	f	SNP											C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27373425					SNP	C	G	G	G	G	G	C	G	G	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37564748	NES08919239	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151522901 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr567184	regulatory region 567184			1451 bp proximal
Rr567185	regulatory region 567185			1568 bp proximal
Rr567186	regulatory region 567186			1723 bp proximal
Tmem74bos	transmembrane 74B, opposite strand			Coding-NonSynonymous
				Noncoding-Transcript-Variant