rs27373422 SNP Detail

Summary

• ID
  rs27373422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151523150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTAGTGTG AGTAGCAGTT
  TCTGGTCTTG GATCTGCATC TCGGCCTAGG AGAAAGGGGG CGTCAGTGAG AGTGTGACAG
  GCACTGTCTG TGCCATCAGT CTGCCTCCCG GCTCAGTGGA GACAAGCCCC TACCTTGTCA
  CACAAGCCAC AGATGCCATA TTCCCCTGAA GCCTCACTTT TGAATCTAGG AAACCGAAAG
  Y
  AAATCACACA CCTTTCCAGA ATGAATTGGA AGATATGCTC TGAAGATGGC ATAGATACCA
  CCCCCATATC TTTTCATTTT GATGGTAACA AATAATCAGC GTATTAGTCA GGATTCTCAA
  GAGAAACGGA ACTTATAGAA TGGACCTATA TAGAGAAAGG GGATTTAATT GACTGGCTTA
  CAGGCTGTGA TGCAGCTAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37564745	NES08919247	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27373422					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37564745	NES08919247	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151523150 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr567184	regulatory region 567184			1202 bp proximal
Rr567185	regulatory region 567185			1319 bp proximal
Rr567186	regulatory region 567186			1474 bp proximal
Tmem74bos	transmembrane 74B, opposite strand			Intron
				Noncoding-Transcript-Variant