rs27372523 SNP Detail

Summary

• ID
  rs27372523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150685002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAACAAAA CAAAACAAAA
  ACCAAAATAA AACCCAAAAT ACCAACCCAA ACCAATCATT ACTCATGTAC AGTGCACTAT
  ACACTGGCTT GGGAATGCCT AGAACCGTGA AAGAGACTTC CATGCCACCA CTGTCACCTA
  CAGGCACTTA GCACTGCACC TTCAGGAAGA CAGGTGCTTT CCCAGGAACA GCCTGGTAAT
  Y
  CCTGCCCTCT CCTAGCCAGC ACCCAAAGCC ATGTGCGCCT GGACAAAGAG AGTTGCTTCT
  ACTAGAGAAA GCAACGTCAG ATGCCTCTTG TCTCATTAGC AGACACCTGC GACAGAATCC
  CCAAACTGCA TGCACTGGTT CTGGAGCCAC CTCAGAAACT ACACAGGAAG AACCATGAAA
  AACCAGTGGG CATGACCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37567744	NES08917552	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	T	C	C	C	T	T	T	T	T
ss147951604	ENSMUSSNP3367682	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27372523					SNP	T	T	C	C	C	C	C	T	C	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37567744	NES08917552	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150685002 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abhd12	abhydrolase domain containing 12			Intron
				Noncoding-Transcript-Variant
Rr567117	regulatory region 567117			533 bp distal
Rr567118	regulatory region 567118			1739 bp proximal
Tssr26717	transcription start site region 26717			695 bp upstream
Tssr26718	transcription start site region 26718			673 bp upstream