rs27372517 SNP Detail

Summary

• ID
  rs27372517
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150685297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGCAGAC ACCTGCGACA
  GAATCCCCAA ACTGCATGCA CTGGTTCTGG AGCCACCTCA GAAACTACAC AGGAAGAACC
  ATGAAAAACC AGTGGGCATG ACCTGGCATG TTCACTCATG AATGGTGACT TTTCAGAGTG
  GCTGATTCAA GTGACCCCTT CTAGTCCAGC ATCCTGCAGC AAACAGCATG CTCCTTTGGG
  S
  CATCGTCACT CACCTTGTAC AGCTCCACAC GGTGGTCACC TCCTCTGCAG CATAAAAAGG
  AGAGAAACAG TAACAACTGT TAGTGCCCCT GTTCAAGGTA GGGACAAGAT AACCCTCAAG
  AGTCTGGGAT CCCAGAGCTG GAGGGATGGT TCAGTAGTTA AGAATGCTTA CTGTTCTTTC
  AGAGGGTCTG GGCTGAATTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37567738	NES08917558	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	C	C	C	C	C	C	C		C	C	C	G
ss147951609	ENSMUSSNP3296755	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27372517					SNP	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37567738	NES08917558	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150685297 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abhd12	abhydrolase domain containing 12			Intron
				Noncoding-Transcript-Variant
Rr567117	regulatory region 567117			828 bp distal
Rr567118	regulatory region 567118			1444 bp proximal
Tssr26717	transcription start site region 26717			990 bp upstream
Tssr26718	transcription start site region 26718			968 bp upstream