rs27372511 SNP Detail

Summary

• ID
  rs27372511
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150686395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAATCCTT TCTTCATCCT
  TCAAGCCTAT TTTCCTTCTT TTATAATGAG CACTGAGGCC ATTTCAGGCA TATGGTTAGT
  GGGAATGCCA TTGCAAGGAC ACACGAATGA GTTAGAGGAG TAAAACATAT ACACTGAAGC
  ACAAAAATGC AAAGAAATGT GTTCAAGACC AGAGGGAAAT CACGCCAGAT GTTCTTAGCT
  R
  TCTTTGAAAG ACACCTTTCC TAAACTCCCC AAACCCCCTC CGCTGACTGA AAACAGAAAG
  TGGGACTGCG AGCTCAGAAA GCTACACCTT CAAGAGACTT CTGTGCTATG ATTACTCAGA
  CTGATGGAGC TGCCCGGGGA CTGTGCTTGC GGAGGGAGGG ATAGCCAGCG AAGCACTTCA
  GCAGGTGAGC CATAGCACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss37567732	NES08917508	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs27372511					SNP	G	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37567732	NES08917508	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150686395 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abhd12	abhydrolase domain containing 12			Intron
				Noncoding-Transcript-Variant
Rr567117	regulatory region 567117			1926 bp distal
Rr567118	regulatory region 567118			346 bp proximal