rs27372494 SNP Detail

Summary

• ID
  rs27372494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150688108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGTCTC CCTGTCTGTG
  AGCTCTGGGC AGAAGAGACC CACAGGTCCA GAGCACACAC GTCTGCCTCC AAACTCTCCA
  GCCCCAGAAA AGTTGTACCT TTCCTTTGTT CTGTAGAAAC TCTCCTTGCA TGCAGAAGGT
  CAGTAAATCT GATTACAAAG ACCACAGGCA TGCTTCACAT AGTCTACGCT AATACATTTT
  Y
  AGCCTAGGAA GGAGCCAGGT ACTGCACAGA GGTCATACTA CTTGTGTGGG CTTACCTGGT
  GCCTGCATTC CCATGCAGGT ATAGTATGAT GGCATGGTTA GAAGCCAGAG CATCCTCATA
  CCACATCTGG TCCTTCCCTT GGGCATTCTT CCACCAGACA GAGGGGATTG TGTGCCTGGA
  GACAGAAGCA GAGAGGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37567715	NES08917531	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27372494					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37567715	NES08917531	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150688108 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abhd12	abhydrolase domain containing 12			Intron
				Noncoding-Transcript-Variant
Rr567118	regulatory region 567118			1012 bp distal
Rr567119	regulatory region 567119			1292 bp proximal