rs27372121 SNP Detail

Summary

• ID
  rs27372121
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152518560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGAATAA CTGAGACTCA
  GAACCATGAA TATCTGTAGG GAAGATTCTC AGGCCTGGAA TTGTTTGGCC AATTATACAG
  GGAGATGTTG GCATACGTCA CCAATTATCT CTTCAGAACA ACCTGTCGAC CTTCACTTAC
  CCCATGGCTC GTCAAGTTGG TATCTTACAA AGCATGAATT TTTCCCATTC TGGTAGGTCA
  R
  AAATGAAATC CTGATACACT GTGAAAGTTG ACAGACCGTC GATCTCAGAA ATGGAGTGCT
  TGCTGAGCCG TGTGTGAGCC TCTGGATTCG TTCCCCGGTG CCACGGAAAG TTCTAAAAGA
  ATAAGGGTTA GAGCTGAGGA AGTGAATAAT GCAATTGTCC CACGAGAGTG AGGACCAGGG
  TTCAGATCTC ACCACTAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37561947	NES08909275	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27372121					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561947	NES08909275	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152518560 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567423	regulatory region 567423			890 bp distal
Rr567424	regulatory region 567424			1506 bp proximal
Rr567425	regulatory region 567425			1743 bp proximal
Rr567426	regulatory region 567426			1816 bp proximal
Tssr20814	transcription start site region 20814			931 bp upstream