rs27372120 SNP Detail

Summary

• ID
  rs27372120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152518591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCACTTACC CCATGGCTCG TCAAGTTGGT ATCTTACAAA
  GCATGAATTT TTCCCATTCT GGTAGGTCAG AAATGAAATC CTGATACACT GTGAAAGTTG
  R
  CAGACCGTCG ATCTCAGAAA TGGAGTGCTT GCTGAGCCGT GTGTGAGCCT CTGGATTCGT
  TCCCCGGTGC CACGGAAAGT TCTAAAAGAA TAAGGGTTAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37561946	NES08909276	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27372120					SNP	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561946	NES08909276	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152518591 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567423	regulatory region 567423			921 bp distal
Rr567424	regulatory region 567424			1475 bp proximal
Rr567425	regulatory region 567425			1712 bp proximal
Rr567426	regulatory region 567426			1785 bp proximal
Tssr20814	transcription start site region 20814			900 bp upstream