rs27372054 SNP Detail

Summary

• ID
  rs27372054
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152536726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGGGAAG GTACCTCCAC
  CCACATATAA CCAGACAGAT TCTCATTCCA CCTGCATTCT GAAGTTTGAA GCCCAACCCC
  AGCAAACCCC CGACGCTGCT GACCAAAAAA AAAAAAAGAA AAAAAAAAAA AGAAAATTCC
  TTTTATCTGA GATTGGTATT TGTAGCTCTG TGCCCTTGGC GGCCAGTCTG ACCTTGTAAA
  S
  CTCAATCTCA TATCCATGGT GGTAAACAAG AGTTCCCTCT CGGGTCTGCT GTGCCAAGTC
  GGGCAGAGCA CTGAGCACAG GCTGACCTCA GTGGTAGGGA AAGCCAGCTG CAGCCCGTCT
  TTGTCAGGCT GGACTTGAGC CACTGCATTC AGGTCTAGCT GTTCCCTGAG GTCTCCCTCC
  TCGGGCTCTT TTCAGACTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37561880	NES08908830	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27372054					SNP	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561880	NES08908830	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152536726 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75645	predicted gene, 75645			439 bp downstream
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567432	regulatory region 567432			955 bp distal
Rr567433	regulatory region 567433			1365 bp distal
Rr567434	regulatory region 567434			within coordinates
Rr567435	regulatory region 567435			1348 bp proximal
Rr567436	regulatory region 567436			1867 bp proximal
Tssr20823	transcription start site region 20823			180 bp upstream
Tssr20824	transcription start site region 20824			652 bp upstream
Tssr20825	transcription start site region 20825			701 bp upstream