rs27372039 SNP Detail

Summary

• ID
  rs27372039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152538384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCACAGCA GCTCCAGGCT
  CTGATTTCCT TAGTCGTTAG TGAAAGCAGA AAGGGGAGTG GCTTAAGGAT GGAACAGACT
  ATACCTAGAT ACCCCATGCC CAGCACAGCC TTGCCTTCTG TGAGGTCAGT TGCCCACACC
  CAAAAATATT GAATGGAAAA CTCCGGTTTT AAATGCCATG CATTCTGAAT ACCAAGATCA
  Y
  GCTTACTGTC CACATGAAGC CTTCCTTGAT CCAGCGCATC ACACTGCGTA CTGCTAACCA
  TTACAGACTC TCACGGCTCT CACAACGTGC CGTGCTATAC AGTTTTGAGG TGCCCTGAGG
  ATAAGGAGGA GGCTGTGTAT TGCTGCTCTT CACTCCTCCC TTCCCCAAAG CTCCATCTCA
  CGGGAGCTGC CTCTGCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37561865	NES08908845	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27372039					SNP	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561865	NES08908845	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152538384 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75645	predicted gene, 75645			within coordinates
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567434	regulatory region 567434			1342 bp distal
Rr567435	regulatory region 567435			within coordinates
Rr567436	regulatory region 567436			209 bp proximal
Rr567437	regulatory region 567437			478 bp proximal
Tssr20823	transcription start site region 20823			1451 bp downstream
Tssr20824	transcription start site region 20824			988 bp downstream
Tssr20825	transcription start site region 20825			946 bp downstream