rs27372037 SNP Detail

Summary

• ID
  rs27372037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152538942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGTGCTT GGTGAGAGGA
  TTACAAAGTG CCAGATCCAG GAATAAGCTT AGAGGCCTTT TCAAGGCCTG TACTACCGCT
  CTCAACCCTC CGCTGGAGTA GGCCGGTAGA CATTCCCCCT GCGGCCACCA GGTGGCGGGC
  TTGCCTTCTA CCCTGGAGAG AAGAGATTCT TGCTCTCATG CCGGGTACAG GGAGGGCCCC
  R
  AGGCCTACAA GGACAGACTT AGCCAGGTAA TCGAGCTAGC CAGGCTATGC CCAGGCCTGG
  GCACCTGGTC TTGATTCATC TAGATGGCTA TATCCCTGAA AGAAGGGATC CAGGACGTAG
  GTAGAGCCTA ATAAAAGGGT CTACTTCTCC GAGACATGAG CAGGCCCTGT GCCAGCATTG
  CTCTAGGTAG ACATCCCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37561863	NES08908847	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27372037					SNP	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561863	NES08908847	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152538942 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75645	predicted gene, 75645			339 bp upstream
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567434	regulatory region 567434			1900 bp distal
Rr567435	regulatory region 567435			350 bp distal
Rr567436	regulatory region 567436			within coordinates
Rr567437	regulatory region 567437			59 bp distal
Tssr20824	transcription start site region 20824			1546 bp downstream
Tssr20825	transcription start site region 20825			1504 bp downstream