rs27372036 SNP Detail

Summary

• ID
  rs27372036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152539085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGT AGAGCCTAAT AAAAGGGTCT
  R
  CTTCTCCGAG ACATGAGCAG GCCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37561862	NES08908848	PERLEGEN	MM_PANEL2	f	SNP			A	A				A	A	G
ss45337809	mCV27576196	ABI	CRAMUS_MOUSE	f	SNP	G	G	A		A	G
ss147972072	ENSMUSSNP594438	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A			G
ss320563191	CHEV_2_152522901	CHEVERUD	SCREENING_POP	f	SNP							G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27372036					SNP	G	G	A	A	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561862	NES08908848	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152539085 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75645	predicted gene, 75645			482 bp upstream
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567435	regulatory region 567435			493 bp distal
Rr567436	regulatory region 567436			within coordinates
Rr567437	regulatory region 567437			202 bp distal
Tssr20824	transcription start site region 20824			1689 bp downstream
Tssr20825	transcription start site region 20825			1647 bp downstream