rs27372033 SNP Detail

Summary

• ID
  rs27372033
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152539556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGA ATAGTGCATC AATCTATCTC
  Y
  TTCACACTCT CATTGAAGAG TTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss37561859	NES08908795	PERLEGEN	MM_PANEL2	f	SNP		T	T	C			C	T	C
ss45340511	mCV27576208	ABI	CRAMUS_MOUSE	f	SNP	C	T			C
ss147972097	ENSMUSSNP4531656	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T			C
ss320563196	CHEV_2_152523372	CHEVERUD	SCREENING_POP	f	SNP						C				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs27372033					SNP	C	T	T	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561859	NES08908795	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152539556 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75645	predicted gene, 75645			953 bp upstream
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567435	regulatory region 567435			964 bp distal
Rr567436	regulatory region 567436			463 bp distal
Rr567437	regulatory region 567437			673 bp distal