rs27372030 SNP Detail

Summary

• ID
  rs27372030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152539880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAGCTCT CTGGTAAGAG
  GGCCACTGGG AAAGAATAAA GTCCACACAT ACTCCCCCCA AAAGTCCGAC ATTCCACATT
  GCCCAAGACC ATCTTAGGCA AGAACATGCA TGGGCTACAG AGCAGGACCC TGGCTGTCAC
  TCCTGACTGG TCCTTCCGTC CCCATCCCCA CATTACCAGT CTGTTCATGT GTTTGTTCTC
  Y
  GTTTATTGTA CTGTGTGAAA GAGTGTTGGG TTGTATACAT GAGTATAGAT GCCTGCAGTA
  GTCAGCAAAG GATGTCGGAT TCCCTGGAGC TGGGGTTACA GGCAGTTGTG AGCCTACAGA
  ACCAACCTTG GGTTTTCTAC AAGAGCAGTG TGCTTTCTTC ACCGCTGAGC CATCCCTCAA
  GCCCCCACGA ATTAAATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37561856	NES08908798	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27372030					SNP	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561856	NES08908798	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152539880 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75645	predicted gene, 75645			1277 bp upstream
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567435	regulatory region 567435			1288 bp distal
Rr567436	regulatory region 567436			787 bp distal
Rr567437	regulatory region 567437			997 bp distal