rs27371362 SNP Detail

Summary

• ID
  rs27371362
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:91297698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTCCAGA CTCTTGGATA
  CAGAATTGCT TTCATCTCCA TTTTATGGAT GCGCTTACAG AAACTTTTGG TTAATTTCTC
  AAAAAATGTG GAATCTCTGC TCTCTACAGT GTTAGAGGGT CTGATCACAC TGGTGAAGGT
  CTCACTGGTA CCACACGGGT CAGTGTTTGC TTTCTCCCCT TCCAAAGAAA GCACTGGGAA
  M
  CTGCTAAGGT AGCCGGCCTG AGGGAGCGGA GGTGTAAATG GTGAGATCTC GGTTAACCTC
  TCAGAAAGAT TCAATAAAGC CAGATGTGGA GGCACACACG TTTAATGGAA TGCCAGCACT
  TGTGGACCGC GCTCTGTGAG TTTGAGGCCA GCCTGGTCTA CACAGCAAGC ACCAAGTCAA
  TCGGGGAGGG CTACATAGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37604484	NES09097524	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27371362					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604484	NES09097524	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91297698 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrp4	low density lipoprotein receptor-related protein 4			Intron
				Noncoding-Transcript-Variant
Rr560744	regulatory region 560744			818 bp distal
Rr560745	regulatory region 560745			267 bp proximal