rs27371358 SNP Detail

Summary

• ID
  rs27371358
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:91298252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGCAAAC AGCCTTCAAG
  GATTCCGATT CAATGCTTAC ATGGAAGGCT GCGTCCGCAT GCGTTTCCTT TCTTTTCTTT
  TATGCAAAAA GGGTTAAAAG CTGCCCTTTA TGATCGCTGC CAGGACTGGA GTGAACAGAC
  AGAATTCCCC TCTCTGGGGA CCCTGAAGGG GAAGCGGTTG TCCAGAAGTC TGCCTTTTGG
  R
  ATATAATGTG TCTGCTTCCT GTATGAATGC CCAAGTCAAG AGTGTGTCCG GCTGGTGGCT
  GCCTGGACTT CACCACAGCT CTGATTTCAG CCATTTCTCT GACATGCAGG AAGTTGTGTG
  TCTTTAGCCA CCTGCAACTT GATGGCCAGC TGATGGAATA CTTCGGCCCT GCAGTCAGCC
  CCAGGAAATT AGAACTGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37604480	NES09097513	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27371358					SNP	G	G	G	G	G	G	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604480	NES09097513	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91298252 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrp4	low density lipoprotein receptor-related protein 4			Intron
				Noncoding-Transcript-Variant
Rr560744	regulatory region 560744			1372 bp distal
Rr560745	regulatory region 560745			within coordinates