rs27371357 SNP Detail

Summary

• ID
  rs27371357
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:91298418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGG CCAGCTGATG GAATACTTCG
  K
  CCCTGCAGTC AGCCCCAGGA AATTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37604479	NES09097514	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	T	G	G		T		G	T		T	T
ss45349980	mCV24711657	ABI	CRAMUS_MOUSE	f	SNP	G	G						G		T
ss146925125	ENSMUSSNP4060611	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								T
ss320392320	CHEV_2_91308230	CHEVERUD	SCREENING_POP	f	SNP													T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27371357					SNP	G	G	T	G	T	G	G	G	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604479	NES09097514	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91298418 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrp4	low density lipoprotein receptor-related protein 4			Intron
				Noncoding-Transcript-Variant
Rr560744	regulatory region 560744			1538 bp distal
Rr560745	regulatory region 560745			12 bp distal