rs27371354 SNP Detail

Summary

• ID
  rs27371354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:91299639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTTTATA AAACCCTGAA
  CCTTGTATTA AAATAAAAAG TAAAATGAGG TCTGAGATGT GGTTTAGTGG GTTTAACCCC
  CAGTGCTACT TTTCCCTTAA GGAAAAAAAA AAGAAAGAAA GAAAGCGAAT TGCACAAAGT
  CATGTGCCTG CTTGATGGAA CCCAAGGTCT GCTTGTCTGC TCCAGGTCAG GCATTTACCC
  Y
  TTTGCACTCT TCCATTTTAT CCCTTCTTCC TATCTGTCTT TCTTTCTGGA TGTCCCTCCA
  GGTCTACCTC TGTTCTGATT GTATGGTACT ATCCATATTT CTCCACCTTT GCTGACTTAT
  GGGTCAGTTT ACAGGGACAA GGAGCATCCC GTGCACTGCT GGGGTACTTA GCTGCATCCC
  TGGCTTCTAG AAGCTCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37604476	NES09097462	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27371354					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604476	NES09097462	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91299639 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrp4	low density lipoprotein receptor-related protein 4			Intron
				Noncoding-Transcript-Variant
Rr560745	regulatory region 560745			1233 bp distal
Rr560746	regulatory region 560746			815 bp proximal