rs27364664 SNP Detail

Summary

• ID
  rs27364664
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93096331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aatagaaag taggtgacat ttcagattaa
  acaagaattc ttgggcccag aaagtttaag taacttgtcc agtaacttga acagcaagca
  ggtggccaga ttaggatata gacccaagcc atctagGTGG TGTGTGCTAC ACTGGCCTCT
  M
  GTGAATTTTT AAATGAACTG TCTATGCTCC TGAGAAGCAG ATGGTGAGCC AGGAAACGTG
  ACCCAAGCAC CATGGCTGAG ACCAGGGAGC AGAGCTGGCC CCAGGAGCTC ATCCATGACC
  CAGGAAGCAC AAAGCTCAGC CTGGTGGGTC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37599685	NES09090415	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	C	A	C		C
ss320395274	CHEV_2_93106143	CHEVERUD	SCREENING_POP	f	SNP										A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27364664					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37599685	NES09090415	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93096331 () rs orientation: forward

Symbol	Name	Function Class
Rr561140	regulatory region 561140	597 bp proximal
Rr561141	regulatory region 561141	1747 bp proximal
Tspan18	tetraspanin 18	Intron