rs27364647 SNP Detail

Summary

• ID
  rs27364647
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93098686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCTAAAA AGTGTTTCAG
  GATAAAGGGG ACAGATGTCA GCACACAGCC TGGAGAGGAT CCAATATCTG CTTGCCCCCA
  ACAACTCTTA CTTCCCCCTC CCTGGTCAGC TGATCTCAAC TTGGCTTTAA GCTTCTCTTT
  GGCGTCCTCA GCGTCCTCAG GTTCTGCAGA AGCAGCCACG GTGACCTCTG TGTACTTTGT
  K
  GGGCAGATGT TCAGAGAAAC CATGCTGAGA AAATTACCTG GACCATGGTG ACTGAGCCAG
  GGTCAGGATC TGGGTGGGGC ATCAGCTCCA GGGACATTTT GCCCTCTGCG ATGCACATCA
  GAAGGAGACC ATGCTCTGCT CATGGGATAC AGTGTGAGCT CAGGAGTATG AGCCCGCCTC
  AGCATCCGTC CAAAGTCCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37599668	NES09090432	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27364647					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37599668	NES09090432	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93098686 () rs orientation: forward

Symbol	Name	Function Class
Rr561140	regulatory region 561140	1187 bp distal
Rr561141	regulatory region 561141	within coordinates
Tspan18	tetraspanin 18	Intron