rs27364642 SNP Detail

Summary

• ID
  rs27364642
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93099284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTATCTG CTTACCTGTC
  ATGGATCTGC TACCTCCTAG TTCCTCAGCA GAGTGGCCAC TTTCCCAACC TTGGCTTGAC
  CACATGACTC ACTTTGGCCA ATGGGATCCC AGAGCTGAAG CAGGATGAAT CCAATGTCAG
  GAAAGCCAAG GCCCCTTGTC TGCTGGCCAA CAGCTACAGG GACAGGTCTC AATAGTGAAA
  R
  CCACTTCAGC CTGAGCCATG GATGAATATT AAGACATCCA GACAACAGGA AAACTTAGAC
  TCAAACCAAA GTTGCACAAG AGACAGGAAG ACACAAGGCC TAGACCCTAC ACCAGCCCTG
  CCAGGTGGCA ACTGGCCTGC AGCCTCTGAC CCGGAGAACC AAAGCTGGGC GGAGCCACTG
  GGCTCTGGGG GCTTTTGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37599663	NES09090437	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27364642					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37599663	NES09090437	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93099284 () rs orientation: forward

Symbol	Name	Function Class
Rr561140	regulatory region 561140	1785 bp distal
Rr561141	regulatory region 561141	533 bp distal
Tspan18	tetraspanin 18	Intron