rs27364641 SNP Detail

Summary

• ID
  rs27364641
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93099328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCAGAGT GGCCACTTTC
  CCAACCTTGG CTTGACCACA TGACTCACTT TGGCCAATGG GATCCCAGAG CTGAAGCAGG
  ATGAATCCAA TGTCAGGAAA GCCAAGGCCC CTTGTCTGCT GGCCAACAGC TACAGGGACA
  GGTCTCAATA GTGAAAGCCA CTTCAGCCTG AGCCATGGAT GAATATTAAG ACATCCAGAC
  M
  ACAGGAAAAC TTAGACTCAA ACCAAAGTTG CACAAGAGAC AGGAAGACAC AAGGCCTAGA
  CCCTACACCA GCCCTGCCAG GTGGCAACTG GCCTGCAGCC TCTGACCCGG AGAACCAAAG
  CTGGGCGGAG CCACTGGGCT CTGGGGGCTT TTGCTAAGTG GAATGATTTT GTTGGTGACT
  AATACAGTAT CTACTTCACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37599662	NES09090438	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27364641					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37599662	NES09090438	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93099328 () rs orientation: forward

Symbol	Name	Function Class
Rr561140	regulatory region 561140	1829 bp distal
Rr561141	regulatory region 561141	577 bp distal
Tspan18	tetraspanin 18	Intron