rs27364512 SNP Detail

Summary

• ID
  rs27364512
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93119606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGTGAC CAACAGCCTC
  AGGCTCTCTC TCTGACATGG CAGGTGATAC CCTCAAACCA TGAAACAAAA TAAACTCTCT
  CCTGTAAGTG GCTTTTGCCA GGTCTTTCTA TCATGGCGAT TAGAAAAGTA GCAAACACAA
  CAGCCATCAG TGTAACAGGA CCGGCACCGA GCTGTTCTTC AGCCTGGGAG TTCGCCTCTC
  R
  TGGCCACTGC AACCACCAGC TGTCAGTGGG CCCATTCAGG GTGAGAAGGC TGTGCCCCAG
  ACAGGAAGGT CCACTTGGAA ACTTCACAAT GTCCGGCTGG CTCATCTTAC TCTGGCTCAG
  TGCCAGGCTA CGACATTGTC TTAGGGTTTC TATCACTGTG AAGAGACACC AAGACCACAG
  CAACTCTGAT AGAAGAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37599531	NES09089807	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27364512					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37599531	NES09089807	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93119606 () rs orientation: forward

Symbol	Name	Function Class
Rr561146	regulatory region 561146	1182 bp distal
Rr561147	regulatory region 561147	1182 bp proximal
Tspan18	tetraspanin 18	Intron