rs27364387 SNP Detail

Summary

• ID
  rs27364387
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93160774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATACCATC ACATGCAAGA
  TGGACTAGAA CCATAGCCTT CCTGGGGAAG AGGCTGGTGC AGTCTGAACT GCCCCCTCCC
  AAGCAGTTTG AGGAAGCTGC CCCAGCCCAT ACAGTGGGCA TAGTCCCACT TCACAGACCT
  CAGAGCTGGC CCAGCCCACA TCCACAGAGG GTATCTGGAT CGGCTGGGGA AATGCAGCCC
  W
  CAGATCCCGA GAGCATTTAT CTGAAAGTCC CAAGGGCTTT AGAGGCATGC TTAGCCCCTG
  GTCCTAGAAC CCAGTGGACT CATCCCAGGG CTGGGGTGGT TTTGGAAGCT GTTTATCGGG
  CCAGCTTCTC ATTGGCACCC GCAGGCTTGG TACTCAATTT GGATGGAATG CAGATCGGAG
  AGGAAAGGAA GAACTGGTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37599406	NES09101933	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27364387					SNP	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37599406	NES09101933	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93160774 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr561153	regulatory region 561153			1902 bp distal
Rr561154	regulatory region 561154			890 bp distal
Rr561155	regulatory region 561155			1920 bp proximal
Tspan18	tetraspanin 18			Intron
				Noncoding-Transcript-Variant