rs27363120 SNP Detail

Summary

• ID
  rs27363120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102914408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCAACAGC TTAGACAGCT GTGGATATAA GAATTCTCTC
  AGTACAGATA AAGCGTCTTC CCTGATCGCC TGCACGGCCA TGTTGCCCTG TGCCTAAGCT
  Y
  TCAGGTTTCC TTATGCACAA TATACCTGAA ACTATGAATA ATTCATTCCT ATCTAAGAAG
  TCAAGTGCCT GTCTGTAATT TAATTTCCCT GATGTATGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37574644	NES09067879	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C	C		T	T	C	C	T	C	C	T	C
ss45319747	mCV24398875	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss147130437	ENSMUSSNP5261535	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27363120					SNP	C	C	C	C	T	C	C	C	T	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37574644	NES09067879	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102914408 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apip	APAF1 interacting protein			Intron
				Noncoding-Transcript-Variant
Rr561794	regulatory region 561794			324 bp proximal
Rr561795	regulatory region 561795			432 bp proximal