rs27363117 SNP Detail

Summary

• ID
  rs27363117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102915761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCCAGCC TCACTAAGCC
  TGTTGCATTT GATTAACACA TATTATAGAT GAGCTACCTA GATATAATAT TTCAGTGATC
  TTTAATGAGC AGAGGGTAAA TTAGAATAGA CACCTGGACA CAGATGTAGT ATGAGCTCTT
  GCTTTTGTTT GTTTGTTTGG TTTGGGTTTT TTTTTTTTCT CCTCTTGTTT AGAATGAGAG
  Y
  AGGGAGTATG GAGAAGTAAC TCCGACACTT ACTCTTGGGA GCCTCAAATC TTGTTTTATT
  TGTGGCTCAT AAAACCAAGC AATACATTAT CTCCTAAAGA AAAAGCTGTT GGTTTTTAAA
  TGTTTTTCTT TTTGTGTTAG TATTGACATG TCCAAAATTT ACTTAGTTTG TCTAAGAATT
  AGTCAGAGTT GATCAAAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37574641	NES09067790	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27363117					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37574641	NES09067790	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102915761 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apip	APAF1 interacting protein			Intron
				Noncoding-Transcript-Variant
D2Mit388	DNA segment, Chr 2, Massachusetts Institute of Technology 388			810 bp proximal
Rr561794	regulatory region 561794			1008 bp distal
Rr561795	regulatory region 561795			540 bp distal
Rr561796	regulatory region 561796			1114 bp proximal