rs27362978 SNP Detail

Summary

• ID
  rs27362978
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102950561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCACCTC ACCGCATTTA
  AAAACTCTAG AATCTTCAAA ACAGCATTGG GAGTGGGCTC TCAGAAAACA GAAGATGACT
  GGCTGGATGT AGCTCCCATC AGTTGTTGTC AATAGCTTAT ACTCAGACAT CTGTGAAAAG
  TATTTCTGTG TCAAGTATCA CGTGACCTTA TGCGAAGGTT TCAGCATTCC TTTCCAAAGA
  R
  CTTATTTTCA GAGTTTCAAG CATTAGAAGC AGAAACCACT CTCCCAGAGG TTTAAACTCC
  AGGTTCTGGA CCATGTCAAG ATATGCCCAT TGTGTGGTTT ATTCAAGGTA ACTCTTTGAA
  AGCACATTCA ACTATGGCAG AATTGGAACA GTGTTTTAAC AAGTCGGAAC AGCATTCGTG
  AGTCCTCTAT CACATTGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37574500	NES09066656	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27362978					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37574500	NES09066656	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102950561 () rs orientation: forward

Symbol	Name	Function Class
Rr561799	regulatory region 561799	708 bp distal