rs27362588 SNP Detail

Summary

• ID
  rs27362588
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103760125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTACAA ATTGGACTCC
  CTGTATGTGA TCATTAATAA CCCACTGTTT CAGCAACATG TCATCAACAT TTTCTCTATC
  TTATTAAAAT AGTCTTAAAA CTTCTCAGCC TGTATGGCTT AACTAATTAC ATGTCATAGG
  CGTCTGTCTA TTTATGCCTT ACGAGTCCCT CTGCCAACAG TTCTTGAGAA TAGAGACTTT
  K
  TTTTTGTCGC AATATGCACA ATAGATCAGA GCATATGTCA AGGCCAACCA TTCGGTAGGC
  ACTCTTTTAA AAATGTGATG AATTCATAAG CAAATGAGTA AATAAATGTA GCCAGTTCTT
  CCTCTGACCC ACGGAGGTTC TTTCCACTTC TTTACTTTTA GAAGAGATTT TATAACCCAA
  CCAGTTGAGA TTGGGTTCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37571407	NES09080791	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27362588					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571407	NES09080791	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103760125 () rs orientation: forward

Symbol	Name	Function Class
Rr561974	regulatory region 561974	1586 bp distal
Rr561975	regulatory region 561975	550 bp proximal
Rr561976	regulatory region 561976	1812 bp proximal