rs27362587 SNP Detail

Summary

• ID
  rs27362587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103760210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAGTCT TAAAACTTCT
  CAGCCTGTAT GGCTTAACTA ATTACATGTC ATAGGCGTCT GTCTATTTAT GCCTTACGAG
  TCCCTCTGCC AACAGTTCTT GAGAATAGAG ACTTTTTTTT TGTCGCAATA TGCACAATAG
  ATCAGAGCAT ATGTCAAGGC CAACCATTCG GTAGGCACTC TTTTAAAAAT GTGATGAATT
  Y
  ATAAGCAAAT GAGTAAATAA ATGTAGCCAG TTCTTCCTCT GACCCACGGA GGTTCTTTCC
  ACTTCTTTAC TTTTAGAAGA GATTTTATAA CCCAACCAGT TGAGATTGGG TTCAATTACA
  AATGACCCTG TGCCTCCCCA AGCACAGTTT AAGCAAGCGA GTTTATTTCT CCTCTGCACA
  CACTCAGGAC GTTTGCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37571406	NES09080793	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27362587					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571406	NES09080793	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103760210 () rs orientation: forward

Symbol	Name	Function Class
Rr561974	regulatory region 561974	1671 bp distal
Rr561975	regulatory region 561975	465 bp proximal
Rr561976	regulatory region 561976	1727 bp proximal