rs27362585 SNP Detail

Summary

• ID
  rs27362585
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103760674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGGAAAC AAGGAGAGGA
  GAACATGGGC CCTTCCTCTG AGGACCCTTC TGCAAGTTCC ATAGGCCATG TCTGCTTGCA
  TTCTTGTTAA TCAGAATGTA GTCACAACTA CATCTAACTT CAAACGATTC TGGGAAATGT
  GGCCTTAATT AGGTATCTAA TACTGTATAT AACTGTTAAT AAGCAATCAA GGGATGAAAA
  K
  TAGAGAACCA TTAGCCAGGA TGACTTTGGA CCCTGGACTG ACCTAAAAGA CCACTCCCTA
  GTGTGATCCT TAATTTCTAC CCGTGGATCT CTGGATATCT GTTGGGTCAG CCTAGCTCCT
  TGGACTAACG CCTGGGACCG GTGCGTGGGG AGGGTTTCAG TGTGTCATGT CTCTGTTGTG
  AGCTTCATCC TGCCAGTTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37571404	NES09080781	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27362585					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571404	NES09080781	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103760674 () rs orientation: forward

Symbol	Name	Function Class
Rr561975	regulatory region 561975	1 bp proximal
Rr561976	regulatory region 561976	1263 bp proximal