rs27362578 SNP Detail

Summary

• ID
  rs27362578
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103762275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGATCAGGC AGCGCTCCAG
  ACTGTGGCCT GCAGGCCAGC CCTGGCCACG ACCTGCCCTT AGATGGTCCA AGAGCAAAGG
  ATGCTTTCTC TTTTCCTTTA TCAGGACCGG GACTATACAT GCCAGATAAG TACTCTACCA
  GGGAACTGCT CCAGGTTGAC TATTGCCTAG AACAACTGCT TTCTGTCTGT GTCTCTCTGT
  M
  TGTGTGCACG CATGTTTCTC TGTGTGTGTG TCTGTGTGTG TGAGAGAGAT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  TGGGTGGGTG TGGTATATGC CCATAGAGGC TCATAGAGGT ATATCACTCT GCCTCACTCC
  CTTTCATCAC AGTCTCTCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37571397	NES09080745	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27362578					SNP	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571397	NES09080745	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103762275 () rs orientation: forward

Symbol	Name	Function Class
Rr561975	regulatory region 561975	850 bp distal
Rr561976	regulatory region 561976	within coordinates
Rr561977	regulatory region 561977	674 bp proximal