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rs27362577 SNP Detail
Summary
  • ID
    rs27362577
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:103763059 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCATTGTCAA TGAATGACTT
    AATGTTAAGC AGAGCTGAGC AGAGACCCCA CATCCCCCCC ACCCCAAGCC TAAAATTCAC
    TTCAAATTTT ACAGAAATGT TTTTTCCGGG GCTGGACTTA GAATGTGTGT TTGGGAGTGG
    TACTGCACTG TGGGCGTGCA CCAGCCACAG TTAGCAGACA CTGTCGATTT CTCAAGGTGA
    Y
    GGCTCCGGCT TTATGTGTTC CCAGCAGCAG CAGAAGAACA TGCCGGCCCC TCTGCGTTCT
    CAGCAACACG GCCAGGCTTT GAGCTTCAGC AGCTCCATCA GCGATGTCTA TTCTGGTGCT
    TGTAAATCCT CATTACTAAG CGATTCTCAC CTGTCCCAGT GCTGGGACCC ACGCCCCAAC
    CTTAAAATTA TTTTGTTGTT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37571396 NES09080737 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T C T T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27362577 SNP T T T T T T T T T C T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37571396 NES09080737 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:103763059 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr561975 regulatory region 561975 1634 bp distal
Rr561976 regulatory region 561976 336 bp distal
Rr561977 regulatory region 561977 within coordinates
Rr561978 regulatory region 561978 1631 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory