GCATTGTCAA TGAATGACTT AATGTTAAGC AGAGCTGAGC AGAGACCCCA CATCCCCCCC ACCCCAAGCC TAAAATTCAC TTCAAATTTT ACAGAAATGT TTTTTCCGGG GCTGGACTTA GAATGTGTGT TTGGGAGTGG TACTGCACTG TGGGCGTGCA CCAGCCACAG TTAGCAGACA CTGTCGATTT CTCAAGGTGA Y GGCTCCGGCT TTATGTGTTC CCAGCAGCAG CAGAAGAACA TGCCGGCCCC TCTGCGTTCT CAGCAACACG GCCAGGCTTT GAGCTTCAGC AGCTCCATCA GCGATGTCTA TTCTGGTGCT TGTAAATCCT CATTACTAAG CGATTCTCAC CTGTCCCAGT GCTGGGACCC ACGCCCCAAC CTTAAAATTA TTTTGTTGTT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37571396 | NES09080737 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | T | T | T | C | T | T | C | T |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27362577 | SNP | T | T | T | T | T | T | T | T | T | C | T | T | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37571396 | NES09080737 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr2:103763059 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr561975 | regulatory region 561975 | 1634 bp distal | ||||||
Rr561976 | regulatory region 561976 | 336 bp distal | ||||||
Rr561977 | regulatory region 561977 | within coordinates | ||||||
Rr561978 | regulatory region 561978 | 1631 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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