rs27362577 SNP Detail

Summary

• ID
  rs27362577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103763059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTGTCAA TGAATGACTT
  AATGTTAAGC AGAGCTGAGC AGAGACCCCA CATCCCCCCC ACCCCAAGCC TAAAATTCAC
  TTCAAATTTT ACAGAAATGT TTTTTCCGGG GCTGGACTTA GAATGTGTGT TTGGGAGTGG
  TACTGCACTG TGGGCGTGCA CCAGCCACAG TTAGCAGACA CTGTCGATTT CTCAAGGTGA
  Y
  GGCTCCGGCT TTATGTGTTC CCAGCAGCAG CAGAAGAACA TGCCGGCCCC TCTGCGTTCT
  CAGCAACACG GCCAGGCTTT GAGCTTCAGC AGCTCCATCA GCGATGTCTA TTCTGGTGCT
  TGTAAATCCT CATTACTAAG CGATTCTCAC CTGTCCCAGT GCTGGGACCC ACGCCCCAAC
  CTTAAAATTA TTTTGTTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37571396	NES09080737	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27362577					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571396	NES09080737	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103763059 () rs orientation: forward

Symbol	Name	Function Class
Rr561975	regulatory region 561975	1634 bp distal
Rr561976	regulatory region 561976	336 bp distal
Rr561977	regulatory region 561977	within coordinates
Rr561978	regulatory region 561978	1631 bp proximal